venerdì 2 novembre 2018

The preliminary program of SWAT4HCLS 2018 is out!

Breaking news!
The preliminary program for SWAT4HCLS 2018 is out:

http://www.swat4ls.org/workshops/antwerp2018/programme/
(follow the link for the actual program with timing)

hashtag

December 3rd Tutorial day

Data and Standards (data and standards: challenges where semantics can make an impact) 
Data science (fundamentals)
Semantics  (Semantic tools and applications)
Room ARoom BRoom C

Data and Standards
Data Science
Semantics
Coffee Break

Data and Standards
Data Science
tutorial continues
Semantics
tutorial continues
Lunch Break

Data and Standards
Data and Standards
Semantics
Coffee Break

Semantics
Data and Standards
tutorial continues
Semantics

    Reception

December 4th-5th Conference days

Conference day 1


Registration (opens 8.30)

Welcome, introduction. Outline of the conference and hackathon

Keynote by Philip Bourne

Selected Talks
Using semantic technologies to enhance metadata submissions to public repositories in biomedicine. Attila L. Egyedi, Martin O’Connor, Marcos Martínez-Romero, Debra Willrett, Josef Hardi, John Graybeal and Mark Musen.
Using Wikidata for semantic data modeling in education and research. Annika Jacobsen, Andra Waagmeester, Rajaram Kaliyaperumal, Greg Stupp, Lynn Schriml, Mark Thompson, Andrew I. Su and Marco Roos.  (short paper)

Coffee break

Selected talks
The Story of an Experiment: A Provenance-based Semantic Approach towards Research Reproducibility. Sheeba Samuel, Kathrin Groeneveld, Frank Taubert, Daniel Walther, Tom Kache, Teresa Langenstück, Birgitta König-Ries, Martin Buecker and Christoph Biskup. 
DSAP: Data Sharing Agreement Privacy Ontology. Mingyuan Li and Reza Samavi. 
FP12 Full paper (6) Kody Moodley, Amrapali Zaveri, Chunlei Wu and Michel Dumontier. A model for capturing provenance of assertions about chemical substances
Increasing the nanopublication recall with a BridgeDb Identifier Mapping Service. Egon Willighagen. (short paper) 

Lunch break (12.30- 13.30)

Keynote by Medha Devare

Selected talks
Design of a framework to support reuse of Open Data about agriculture. Alec Gordon, Mohammad Sadnan Al Manir, Brandon Smith, Amir Hossein Rezaie and Christopher Baker. 
TBD (Short Talk)
Ontology-Driven Metadata Enrichment for Genomic Datasets. Anna Bernasconi, Arif Canakoglu, Andrea Colombo and Stefano Ceri. 

Lightning poster presentations

Poster and demo session, Coffee break

Panel discussion (Agrisemantics)
Social dinner (conference end at 18.00)

Conference day 2


Registration (opens at 8.30)

Recap from the previous day

TBD

Selected Talks
Sparklis over PEGASE Knowledge Graph: A New Tool for Pharmacovigilance. Carlos Bobed, Laura Douze, Sébastien Ferré and Romaric Marcilly. 
Allotrope Data Format – Semantic Data Management in Life Sciences. Heiner Oberkampf, Helge Krieg, Christian Senger, Thomas Weber and Wolfgang Colsman. (Industry report)
Architecture for the harmonization of clinical cohort data in the IMI EMIF projectRudi Verbeeck, Luiza Gabriel and Michel van Speybroeck. (Industry report)

Coffee break

Selected talks
A Distributed Analytics Platform to Execute FHIR based Phenotyping Algorithms. Md. Rezaul Karim, Binh-Phi Nguyen, Lukas Zimmermann, Toralf Kirsten, Matthias Löbe, Frank Meineke, Holger Stenzhorn, Oliver Kohlbacher, Stefan Decker and Oya Beyan. 
A Semantic Data Integration Methodology for Translational Neurodegenerative Disease Research. Sumit Madan, Maksims Fiosins, Stefan Bonn and Juliane Fluck. 
Cooperation of bio-ontologies for the classification of genetic intellectual disabilities : a diseasome approach. Gabin Personeni, Marie-Dominique Devignes, Malika Smail-Tabbone, Philippe Jonveaux, Céline Bonnet and Adrien Coulet.
Progress Towards an Ontology Mapping Service. Industry (38) Ian Harrow, Martin Romacker, Andrea Splendiani, Peter Woollard, Tom Plasterer, Rainer Winnenburg, Scott Markel, Siddharth Mehta, Chris Piddington, Yasmin Alam-Faruque, Rama Balakrishnan, Jane Lomax, Jane Reed, Christian Senger, Jabe Wilson, Filip Pattyn, Ernesto Jimenez-Ruiz and Simon Jupp.  (Industry report)

Lunch break (12.30-13.30)

Keynote by Dean Allemang

Selected talks
Evaluation of Knowledge Graph Embedding Approaches for Drug-Drug Interaction Prediction using Linked Open Data. Remzi Çelebi, Erkan Yaşar, Hüseyin Uyar, Özgür Gümüş, Oguz Dikenelli and Michel Dumontier.  
Vec2SPARQL: integrating SPARQL queries and knowledge graph embeddings. Maxat Kulmanov, Senay Kafkas, Andreas Karwath, Alexander Malic, Georgios V Gkoutos, Michel Dumontier and Robert Hoehndorf.  

Poster and demo session, Coffee break

Selected talks
Data2Services: enabling automated conversion of data to services.Vincent Emonet, Amrapali Zaveri, Alexander Malix, Andreea Grigoriu and Michel Dumontier. 
Getting the best of Linked Data and Property Graphs: rdf2neo and the KnetMiner Use Case. Marco Brandizi, Ajit Singh and Keywan Hassani-Pak.

Panel discussion
(ends at 17.30)

December 6th Hackathon day


Feel free to add your idea to the hackathon brainstorming doc!

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